Protein Structure Diagram

One protein at four scales: the chain, its helices and sheets, the folded shape, and several chains joined.

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Each numbered ring is a button. Use the arrow keys to move between them and Enter to choose. Names are read out in Study, and once a part is answered.

All 13 parts on the diagram

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The four levels 4

  1. Primary structure The order of amino acids in the chain. Peptide bonds hold it together.
  2. Secondary structure Local folds of the chain: helices and sheets. Hydrogen bonds along the backbone hold them.
  3. Tertiary structure The full three-dimensional shape of one chain. Bonds between side chains hold the fold.
  4. Quaternary structure Two or more folded chains joined as one protein. Each chain is called a subunit.

The chain and its folds 5

  1. Amino acid One building block of the chain. Proteins are built from twenty kinds.
  2. Peptide bond The bond that joins one amino acid to the next. A chain of them makes a polypeptide.
  3. Alpha helix The chain wound into a coil. Hydrogen bonds hold each turn to the next.
  4. Beta sheet Stretches of chain lying side by side. Hydrogen bonds between neighboring strands hold the sheet.
  5. Hydrogen bonds Weak bonds between groups of the backbone. They hold the helix and the sheet in shape.

What holds the folded protein 4

  1. Disulfide bond A covalent bond between two sulfur atoms. It links two cysteine side chains.
  2. Hydrophobic interactions Nonpolar side chains packed together inside the protein. They are kept away from the water around it.
  3. Ionic bond An attraction between a positive and a negative side chain. Only charged amino acids form it.
  4. Polypeptide subunit One folded chain of a protein that has several. Hemoglobin has four.

How this list was compiled: Every name checked on 2026-10-03 against Nature Education, Scitable: Protein Structure (https://www.nature.com/scitable/topicpage/protein-structure-14122136/); Wikipedia, text only: Protein structure, Protein tertiary structure, Protein quaternary structure, Alpha helix, Beta sheet; and Molecular Biology of the Cell, 4th edition, chapter 3, The Shape and Structure of Proteins (NCBI Bookshelf NBK26830, archived copy of 2026-09-03). Licence: own work

The drawing: Drawn for this site on 2026-10-03 from plain geometry; nothing traced. Licence: own work

How it works

A protein structure diagram with all four levels: primary, secondary, tertiary and quaternary. The first drawing names the levels, the second the chain and its folds, the third the bonds that hold a folded protein.

Read the full guide

Read the four levels in order

Primary structure is the order of amino acids in a chain, joined by peptide bonds. Secondary structure is the local folding of that chain into alpha helices and beta sheets, held by hydrogen bonds. Tertiary structure is the full three-dimensional shape of one chain. Quaternary structure is two or more chains, called subunits, joined as one protein.

What holds the fold

Side chains hold the tertiary shape: nonpolar ones pack together inside, charged ones attract each other in ionic bonds, and two sulfur atoms can join in a disulfide bond.

  • A protein made of one chain has no quaternary structure: it stops at tertiary.

Questions and answers

What are the four levels of protein structure?

Primary, secondary, tertiary and quaternary. They are the sequence of amino acids, its local folds into helices and sheets, the overall shape of one chain, and the arrangement of several chains in one protein.

What is the difference between an alpha helix and a beta sheet?

Both are secondary structure held by hydrogen bonds along the backbone. In an alpha helix the chain winds into a coil. In a beta sheet, stretches of chain lie side by side.

What bonds hold the tertiary structure of a protein?

Interactions between side chains: hydrophobic interactions, ionic bonds, hydrogen bonds and disulfide bonds. Only the disulfide bond is a covalent bond.

Can I practice here for “drag the labels onto the diagram to identify the structures of proteins.”?

Yes, for practice. That sentence is the instruction of a labeling exercise. The drawings here are our own and not a copy of any course figure, so your figure may show other examples.